PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.5G142400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 339aa    MW: 37801 Da    PI: 5.3831
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.5G142400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix68.11.7e-2138132185
            trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                         rWt++e+ +Lie+++ +e+++++g+            +p+W+ vs+++++rg++r+p+qC+++w+nl  ++kki+++e++ +  ++s +++
  Prupe.5G142400.1.p  38 RWTRHETFVLIEGKKVVENAVQKGRsrsssalgsdHFEPKWDLVSSYCKQRGVSREPVQCRKRWSNLLVDFKKIRNWESQIKGAAESFWVM 128
                         8*********************986666777777688*******************************************98888888888 PP

            trihelix  82 fdql 85 
                          +++
  Prupe.5G142400.1.p 129 RNDV 132
                         7765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-529106IPR009057Homeodomain-like
PROSITE profilePS500906.71331105IPR017877Myb-like domain
PfamPF138371.3E-1137128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MALDSIKHEG ASSTTSDQVD RQQVPNGSSD DRAKRHPRWT RHETFVLIEG KKVVENAVQK  60
GRSRSSSALG SDHFEPKWDL VSSYCKQRGV SREPVQCRKR WSNLLVDFKK IRNWESQIKG  120
AAESFWVMRN DVRKERKLPG FFDREVYNIL DGNAVTATAA CPLALFIPVQ TDAQSGDGAE  180
AAAAEEEEEE EPGKAANGLQ QDMAEDGLCS DSEESEQEET ESKKENLMQD SPATTVTTPM  240
PSSGTIKEKR GLDSNACGEH ISQEKRKQRR LAIDGCENNY SDQLIRVLER NNALLNAQLE  300
ARNINCHLDR EQRKEQSNSL LAAISKVTDA LVRIADKL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263270EKRKQRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008239639.10.0PREDICTED: uncharacterized protein LOC103338233
TrEMBLM5WCA70.0M5WCA7_PRUPE; Uncharacterized protein
STRINGVIT_17s0000g00270.t012e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.19e-77Trihelix family protein